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DCAF4, a novel gene associated with leucocyte telomere length

Identifieur interne : 003285 ( Main/Exploration ); précédent : 003284; suivant : 003286

DCAF4, a novel gene associated with leucocyte telomere length

Auteurs : Massimo Mangino [Royaume-Uni] ; Lene Christiansen [Danemark] ; Rivka Stone [États-Unis] ; Steven C. Hunt [États-Unis] ; Kent Horvath [États-Unis] ; Dan T A. Eisenberg [États-Unis] ; Masayuki Kimura [États-Unis] ; Inge Petersen [Danemark] ; Jeremy D. Kark [Israël] ; Utz Herbig [États-Unis] ; Alex P. Reiner [États-Unis] ; Athanase Benetos [France] ; Veryan Codd [Royaume-Uni] ; Dale R. Nyholt [Australie] ; Ronit Sinnreich [Israël] ; Kaare Christensen [Danemark] ; Hisham Nassar [Israël] ; Shih-Jen Hwang [États-Unis] ; Daniel Levy [États-Unis] ; Veronique Bataille [Royaume-Uni] ; Annette L. Fitzpatrick [États-Unis] ; Wei Chen [États-Unis] ; Gerald S. Berenson [États-Unis] ; Nilesh J. Samani [Royaume-Uni] ; Nicholas G. Martin [Australie] ; Sarah Tishkoff [États-Unis] ; Nicholas J. Schork [États-Unis] ; Kirsten Ohm Kyvik [Danemark] ; Christine Dalg Rd [Danemark] ; Timothy D. Spector [Royaume-Uni] ; Abraham Aviv [États-Unis]

Source :

RBID : PMC:4345921

Descripteurs français

English descriptors

Abstract

Background

Leucocyte telomere length (LTL), which is fashioned by multiple genes, has been linked to a host of human diseases, including sporadic melanoma. A number of genes associated with LTL have already been identified through genome-wide association studies. The main aim of this study was to establish whether DCAF4 (DDB1 and CUL4-associated factor 4) is associated with LTL. In addition, using ingenuity pathway analysis (IPA), we examined whether LTL-associated genes in the general population might partially explain the inherently longer LTL in patients with sporadic melanoma, the risk for which is increased with ultraviolet radiation (UVR).

Results

Genome-wide association (GWA) meta-analysis and de novo genotyping of 20 022 individuals revealed a novel association (p=6.4×10−10) between LTL and rs2535913, which lies within DCAF4. Notably, eQTL analysis showed that rs2535913 is associated with decline in DCAF4 expressions in both lymphoblastoid cells and sun-exposed skin (p=4.1×10−3 and 2×10−3, respectively). Moreover, IPA revealed that LTL-associated genes, derived from GWA meta-analysis (N=9190), are over-represented among genes engaged in melanoma pathways. Meeting increasingly stringent p value thresholds (p<0.05, <0.01, <0.005, <0.001) in the LTL-GWA meta-analysis, these genes were jointly over-represented for melanoma at p values ranging from 1.97×10−169 to 3.42×10−24.

Conclusions

We uncovered a new locus associated with LTL in the general population. We also provided preliminary findings that suggest a link of LTL through genetic mechanisms with UVR and melanoma in the general population.


Url:
DOI: 10.1136/jmedgenet-2014-102681
PubMed: 25624462
PubMed Central: 4345921


Affiliations:


Links toward previous steps (curation, corpus...)


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<addr-line>Epidemiology Unit</addr-line>
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<addr-line>Jerusalem</addr-line>
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<country xml:lang="fr">États-Unis</country>
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<addr-line>Department of Geriatrics</addr-line>
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<addr-line>Nancy</addr-line>
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<country>France</country>
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<country xml:lang="fr">France</country>
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<addr-line>Leicester</addr-line>
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<country>UK</country>
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<country xml:lang="fr">Royaume-Uni</country>
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<name sortKey="Christensen, Kaare" sort="Christensen, Kaare" uniqKey="Christensen K" first="Kaare" last="Christensen">Kaare Christensen</name>
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<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<affiliation wicri:level="1">
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<institution>Odense University Hospital</institution>
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<addr-line>Odense</addr-line>
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<country>Denmark</country>
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<name sortKey="Nassar, Hisham" sort="Nassar, Hisham" uniqKey="Nassar H" first="Hisham" last="Nassar">Hisham Nassar</name>
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<addr-line>Jerusalem</addr-line>
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<name sortKey="Hwang, Shih Jen" sort="Hwang, Shih Jen" uniqKey="Hwang S" first="Shih-Jen" last="Hwang">Shih-Jen Hwang</name>
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<country xml:lang="fr">États-Unis</country>
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<country xml:lang="fr">États-Unis</country>
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<name sortKey="Levy, Daniel" sort="Levy, Daniel" uniqKey="Levy D" first="Daniel" last="Levy">Daniel Levy</name>
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<country xml:lang="fr">États-Unis</country>
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<nlm:aff id="af18">
<institution>The Framingham Heart Study</institution>
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<addr-line>Framingham, Massachusetts</addr-line>
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<country xml:lang="fr">États-Unis</country>
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<name sortKey="Bataille, Veronique" sort="Bataille, Veronique" uniqKey="Bataille V" first="Veronique" last="Bataille">Veronique Bataille</name>
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<institution>King's College London</institution>
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<addr-line>London</addr-line>
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<country>UK</country>
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<country xml:lang="fr">Royaume-Uni</country>
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<addr-line>Herts</addr-line>
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<name sortKey="Fitzpatrick, Annette L" sort="Fitzpatrick, Annette L" uniqKey="Fitzpatrick A" first="Annette L" last="Fitzpatrick">Annette L. Fitzpatrick</name>
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<author>
<name sortKey="Chen, Wei" sort="Chen, Wei" uniqKey="Chen W" first="Wei" last="Chen">Wei Chen</name>
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<institution>Tulane University</institution>
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<addr-line>New Orleans, Louisiana</addr-line>
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<author>
<name sortKey="Berenson, Gerald S" sort="Berenson, Gerald S" uniqKey="Berenson G" first="Gerald S" last="Berenson">Gerald S. Berenson</name>
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<nlm:aff id="af20">
<addr-line>Center for Cardiovascular Health</addr-line>
,
<institution>Tulane University</institution>
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<addr-line>New Orleans, Louisiana</addr-line>
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<country>USA</country>
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<country xml:lang="fr">États-Unis</country>
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<author>
<name sortKey="Samani, Nilesh J" sort="Samani, Nilesh J" uniqKey="Samani N" first="Nilesh J" last="Samani">Nilesh J. Samani</name>
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<nlm:aff id="af13">
<addr-line>Department of Cardiovascular Sciences</addr-line>
,
<institution>University of Leicester</institution>
,
<addr-line>Leicester</addr-line>
,
<country>UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<affiliation wicri:level="1">
<nlm:aff id="af14">
<institution>National Institute for Health Research (NIHR) Leicester Cardiovascular Biomedical Research Unit, Glenfield Hospital</institution>
,
<addr-line>Leicester</addr-line>
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<country>UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<author>
<name sortKey="Martin, Nicholas G" sort="Martin, Nicholas G" uniqKey="Martin N" first="Nicholas G" last="Martin">Nicholas G. Martin</name>
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<nlm:aff id="af15">
<institution>QIMR Berghofer Medical Research Institute</institution>
,
<addr-line>Brisbane</addr-line>
,
<country>Australia</country>
</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
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<author>
<name sortKey="Tishkoff, Sarah" sort="Tishkoff, Sarah" uniqKey="Tishkoff S" first="Sarah" last="Tishkoff">Sarah Tishkoff</name>
<affiliation wicri:level="1">
<nlm:aff id="af21">
<addr-line>Department of Genetics</addr-line>
,
<institution>University of Pennsylvania</institution>
,
<addr-line>Philadelphia, Pennsylvania</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Schork, Nicholas J" sort="Schork, Nicholas J" uniqKey="Schork N" first="Nicholas J" last="Schork">Nicholas J. Schork</name>
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<nlm:aff id="af22">
<addr-line>Department of Molecular and Experimental Medicine</addr-line>
,
<institution>The Scripps Research Institute</institution>
,
<addr-line>San Diego, California</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Kyvik, Kirsten Ohm" sort="Kyvik, Kirsten Ohm" uniqKey="Kyvik K" first="Kirsten Ohm" last="Kyvik">Kirsten Ohm Kyvik</name>
<affiliation wicri:level="1">
<nlm:aff id="af3">
<addr-line>Epidemiology Unit</addr-line>
,
<institution>The Danish Aging Research Center and The Danish Twin Registry, Institute of Public Health, University of Southern Denmark</institution>
,
<addr-line>Odense</addr-line>
,
<country>Denmark</country>
</nlm:aff>
<country xml:lang="fr">Danemark</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="af23">
<institution>Institute of Regional Health Services Research, University of Southern Denmark</institution>
,
<addr-line>Odense</addr-line>
,
<country>Denmark</country>
</nlm:aff>
<country xml:lang="fr">Danemark</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="af24">
<institution>Odense Patient data Explorative Network (OPEN), Odense University Hospital</institution>
,
<addr-line>Odense</addr-line>
,
<country>Denmark</country>
</nlm:aff>
<country xml:lang="fr">Danemark</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Dalg Rd, Christine" sort="Dalg Rd, Christine" uniqKey="Dalg Rd C" first="Christine" last="Dalg Rd">Christine Dalg Rd</name>
<affiliation wicri:level="1">
<nlm:aff id="af25">
<institution>Institute of Public Health, Environmental Medicine, University of Southern Denmark</institution>
,
<addr-line>Odense</addr-line>
,
<country>Denmark</country>
</nlm:aff>
<country xml:lang="fr">Danemark</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Spector, Timothy D" sort="Spector, Timothy D" uniqKey="Spector T" first="Timothy D" last="Spector">Timothy D. Spector</name>
<affiliation wicri:level="1">
<nlm:aff id="af1">
<addr-line>Department of Twin Research and Genetic Epidemiology</addr-line>
,
<institution>King's College London</institution>
,
<addr-line>London</addr-line>
,
<country>UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Aviv, Abraham" sort="Aviv, Abraham" uniqKey="Aviv A" first="Abraham" last="Aviv">Abraham Aviv</name>
<affiliation wicri:level="1">
<nlm:aff id="af5">
<institution>Center of Human Development and Aging, Rutgers, The State University of New Jersey, New Jersey Medical School</institution>
,
<addr-line>Newark, New Jersey</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PMC</idno>
<idno type="pmid">25624462</idno>
<idno type="pmc">4345921</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4345921</idno>
<idno type="RBID">PMC:4345921</idno>
<idno type="doi">10.1136/jmedgenet-2014-102681</idno>
<date when="2015">2015</date>
<idno type="wicri:Area/Pmc/Corpus">000557</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000557</idno>
<idno type="wicri:Area/Pmc/Curation">000557</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000557</idno>
<idno type="wicri:Area/Pmc/Checkpoint">001251</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">001251</idno>
<idno type="wicri:source">PubMed</idno>
<idno type="wicri:Area/PubMed/Corpus">002F77</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">002F77</idno>
<idno type="wicri:Area/PubMed/Curation">002E98</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">002E98</idno>
<idno type="wicri:Area/PubMed/Checkpoint">002E98</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">002E98</idno>
<idno type="wicri:Area/Ncbi/Merge">002202</idno>
<idno type="wicri:Area/Ncbi/Curation">002202</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">002202</idno>
<idno type="wicri:Area/Main/Merge">003286</idno>
<idno type="wicri:Area/Main/Curation">003285</idno>
<idno type="wicri:Area/Main/Exploration">003285</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en" level="a" type="main">
<italic>DCAF4</italic>
, a novel gene associated with leucocyte telomere length</title>
<author>
<name sortKey="Mangino, Massimo" sort="Mangino, Massimo" uniqKey="Mangino M" first="Massimo" last="Mangino">Massimo Mangino</name>
<affiliation wicri:level="1">
<nlm:aff id="af1">
<addr-line>Department of Twin Research and Genetic Epidemiology</addr-line>
,
<institution>King's College London</institution>
,
<addr-line>London</addr-line>
,
<country>UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="af2">
<institution>National Institute for Health Research (NIHR) Biomedical Research Centre at Guy's and St. Thomas’ Foundation Trust</institution>
,
<addr-line>London</addr-line>
,
<country>UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Christiansen, Lene" sort="Christiansen, Lene" uniqKey="Christiansen L" first="Lene" last="Christiansen">Lene Christiansen</name>
<affiliation wicri:level="1">
<nlm:aff id="af3">
<addr-line>Epidemiology Unit</addr-line>
,
<institution>The Danish Aging Research Center and The Danish Twin Registry, Institute of Public Health, University of Southern Denmark</institution>
,
<addr-line>Odense</addr-line>
,
<country>Denmark</country>
</nlm:aff>
<country xml:lang="fr">Danemark</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="af4">
<addr-line>Department of Clinical Genetics, and Department of Clinical Biochemistry and Pharmacology</addr-line>
,
<institution>Odense University Hospital</institution>
,
<addr-line>Odense</addr-line>
,
<country>Denmark</country>
</nlm:aff>
<country xml:lang="fr">Danemark</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Stone, Rivka" sort="Stone, Rivka" uniqKey="Stone R" first="Rivka" last="Stone">Rivka Stone</name>
<affiliation wicri:level="1">
<nlm:aff id="af5">
<institution>Center of Human Development and Aging, Rutgers, The State University of New Jersey, New Jersey Medical School</institution>
,
<addr-line>Newark, New Jersey</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Hunt, Steven C" sort="Hunt, Steven C" uniqKey="Hunt S" first="Steven C" last="Hunt">Steven C. Hunt</name>
<affiliation wicri:level="1">
<nlm:aff id="af6">
<addr-line>Cardiovascular Genetics Division, Department of Medicine</addr-line>
,
<institution>University of Utah</institution>
,
<addr-line>Salt Lake City, Utah</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Horvath, Kent" sort="Horvath, Kent" uniqKey="Horvath K" first="Kent" last="Horvath">Kent Horvath</name>
<affiliation wicri:level="1">
<nlm:aff id="af5">
<institution>Center of Human Development and Aging, Rutgers, The State University of New Jersey, New Jersey Medical School</institution>
,
<addr-line>Newark, New Jersey</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Eisenberg, Dan T A" sort="Eisenberg, Dan T A" uniqKey="Eisenberg D" first="Dan T A" last="Eisenberg">Dan T A. Eisenberg</name>
<affiliation wicri:level="1">
<nlm:aff id="af7">
<addr-line>Department of Anthropology</addr-line>
,
<institution>University of Washington</institution>
,
<addr-line>Seattle, Washington</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="af8">
<institution>Center for Studies in Demography and Ecology, University of Washington</institution>
,
<addr-line>Seattle, Washington</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Kimura, Masayuki" sort="Kimura, Masayuki" uniqKey="Kimura M" first="Masayuki" last="Kimura">Masayuki Kimura</name>
<affiliation wicri:level="1">
<nlm:aff id="af5">
<institution>Center of Human Development and Aging, Rutgers, The State University of New Jersey, New Jersey Medical School</institution>
,
<addr-line>Newark, New Jersey</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Petersen, Inge" sort="Petersen, Inge" uniqKey="Petersen I" first="Inge" last="Petersen">Inge Petersen</name>
<affiliation wicri:level="1">
<nlm:aff id="af3">
<addr-line>Epidemiology Unit</addr-line>
,
<institution>The Danish Aging Research Center and The Danish Twin Registry, Institute of Public Health, University of Southern Denmark</institution>
,
<addr-line>Odense</addr-line>
,
<country>Denmark</country>
</nlm:aff>
<country xml:lang="fr">Danemark</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Kark, Jeremy D" sort="Kark, Jeremy D" uniqKey="Kark J" first="Jeremy D" last="Kark">Jeremy D. Kark</name>
<affiliation wicri:level="1">
<nlm:aff id="af9">
<addr-line>Epidemiology Unit</addr-line>
,
<institution>Hebrew University-Hadassah School of Public Health and Community Medicine</institution>
,
<addr-line>Jerusalem</addr-line>
,
<country>Israel</country>
</nlm:aff>
<country xml:lang="fr">Israël</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Herbig, Utz" sort="Herbig, Utz" uniqKey="Herbig U" first="Utz" last="Herbig">Utz Herbig</name>
<affiliation wicri:level="1">
<nlm:aff id="af5">
<institution>Center of Human Development and Aging, Rutgers, The State University of New Jersey, New Jersey Medical School</institution>
,
<addr-line>Newark, New Jersey</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Reiner, Alex P" sort="Reiner, Alex P" uniqKey="Reiner A" first="Alex P" last="Reiner">Alex P. Reiner</name>
<affiliation wicri:level="1">
<nlm:aff id="af10">
<addr-line>Department of Epidemiology</addr-line>
,
<institution>University of Washington</institution>
,
<addr-line>Seattle, Washington</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="af11">
<addr-line>Public Health Sciences Division</addr-line>
,
<institution>Fred Hutchinson Cancer Research Center</institution>
,
<addr-line>Seattle, Washington</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Benetos, Athanase" sort="Benetos, Athanase" uniqKey="Benetos A" first="Athanase" last="Benetos">Athanase Benetos</name>
<affiliation wicri:level="1">
<nlm:aff id="af12">
<addr-line>Department of Geriatrics</addr-line>
,
<institution>Universite de Lorraine INSERM U961</institution>
,
<addr-line>Nancy</addr-line>
,
<country>France</country>
</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Codd, Veryan" sort="Codd, Veryan" uniqKey="Codd V" first="Veryan" last="Codd">Veryan Codd</name>
<affiliation wicri:level="1">
<nlm:aff id="af13">
<addr-line>Department of Cardiovascular Sciences</addr-line>
,
<institution>University of Leicester</institution>
,
<addr-line>Leicester</addr-line>
,
<country>UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="af14">
<institution>National Institute for Health Research (NIHR) Leicester Cardiovascular Biomedical Research Unit, Glenfield Hospital</institution>
,
<addr-line>Leicester</addr-line>
,
<country>UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Nyholt, Dale R" sort="Nyholt, Dale R" uniqKey="Nyholt D" first="Dale R" last="Nyholt">Dale R. Nyholt</name>
<affiliation wicri:level="1">
<nlm:aff id="af15">
<institution>QIMR Berghofer Medical Research Institute</institution>
,
<addr-line>Brisbane</addr-line>
,
<country>Australia</country>
</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Sinnreich, Ronit" sort="Sinnreich, Ronit" uniqKey="Sinnreich R" first="Ronit" last="Sinnreich">Ronit Sinnreich</name>
<affiliation wicri:level="1">
<nlm:aff id="af9">
<addr-line>Epidemiology Unit</addr-line>
,
<institution>Hebrew University-Hadassah School of Public Health and Community Medicine</institution>
,
<addr-line>Jerusalem</addr-line>
,
<country>Israel</country>
</nlm:aff>
<country xml:lang="fr">Israël</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Christensen, Kaare" sort="Christensen, Kaare" uniqKey="Christensen K" first="Kaare" last="Christensen">Kaare Christensen</name>
<affiliation wicri:level="1">
<nlm:aff id="af3">
<addr-line>Epidemiology Unit</addr-line>
,
<institution>The Danish Aging Research Center and The Danish Twin Registry, Institute of Public Health, University of Southern Denmark</institution>
,
<addr-line>Odense</addr-line>
,
<country>Denmark</country>
</nlm:aff>
<country xml:lang="fr">Danemark</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="af4">
<addr-line>Department of Clinical Genetics, and Department of Clinical Biochemistry and Pharmacology</addr-line>
,
<institution>Odense University Hospital</institution>
,
<addr-line>Odense</addr-line>
,
<country>Denmark</country>
</nlm:aff>
<country xml:lang="fr">Danemark</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Nassar, Hisham" sort="Nassar, Hisham" uniqKey="Nassar H" first="Hisham" last="Nassar">Hisham Nassar</name>
<affiliation wicri:level="1">
<nlm:aff id="af16">
<addr-line>Department of Cardiology</addr-line>
,
<institution>Hadassah University Medical Center</institution>
,
<addr-line>Jerusalem</addr-line>
,
<country>Israel</country>
</nlm:aff>
<country xml:lang="fr">Israël</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Hwang, Shih Jen" sort="Hwang, Shih Jen" uniqKey="Hwang S" first="Shih-Jen" last="Hwang">Shih-Jen Hwang</name>
<affiliation wicri:level="1">
<nlm:aff id="af17">
<institution>Population Sciences Branch of the National Heart, Lung and Blood Institute</institution>
,
<addr-line>Bethesda, Maryland</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="af18">
<institution>The Framingham Heart Study</institution>
,
<addr-line>Framingham, Massachusetts</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Levy, Daniel" sort="Levy, Daniel" uniqKey="Levy D" first="Daniel" last="Levy">Daniel Levy</name>
<affiliation wicri:level="1">
<nlm:aff id="af17">
<institution>Population Sciences Branch of the National Heart, Lung and Blood Institute</institution>
,
<addr-line>Bethesda, Maryland</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="af18">
<institution>The Framingham Heart Study</institution>
,
<addr-line>Framingham, Massachusetts</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Bataille, Veronique" sort="Bataille, Veronique" uniqKey="Bataille V" first="Veronique" last="Bataille">Veronique Bataille</name>
<affiliation wicri:level="1">
<nlm:aff id="af1">
<addr-line>Department of Twin Research and Genetic Epidemiology</addr-line>
,
<institution>King's College London</institution>
,
<addr-line>London</addr-line>
,
<country>UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="af19">
<addr-line>Department of Dermatology</addr-line>
,
<institution>West Herts NHS Trust</institution>
,
<addr-line>Herts</addr-line>
,
<country>UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Fitzpatrick, Annette L" sort="Fitzpatrick, Annette L" uniqKey="Fitzpatrick A" first="Annette L" last="Fitzpatrick">Annette L. Fitzpatrick</name>
<affiliation wicri:level="1">
<nlm:aff id="af10">
<addr-line>Department of Epidemiology</addr-line>
,
<institution>University of Washington</institution>
,
<addr-line>Seattle, Washington</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Chen, Wei" sort="Chen, Wei" uniqKey="Chen W" first="Wei" last="Chen">Wei Chen</name>
<affiliation wicri:level="1">
<nlm:aff id="af20">
<addr-line>Center for Cardiovascular Health</addr-line>
,
<institution>Tulane University</institution>
,
<addr-line>New Orleans, Louisiana</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Berenson, Gerald S" sort="Berenson, Gerald S" uniqKey="Berenson G" first="Gerald S" last="Berenson">Gerald S. Berenson</name>
<affiliation wicri:level="1">
<nlm:aff id="af20">
<addr-line>Center for Cardiovascular Health</addr-line>
,
<institution>Tulane University</institution>
,
<addr-line>New Orleans, Louisiana</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Samani, Nilesh J" sort="Samani, Nilesh J" uniqKey="Samani N" first="Nilesh J" last="Samani">Nilesh J. Samani</name>
<affiliation wicri:level="1">
<nlm:aff id="af13">
<addr-line>Department of Cardiovascular Sciences</addr-line>
,
<institution>University of Leicester</institution>
,
<addr-line>Leicester</addr-line>
,
<country>UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="af14">
<institution>National Institute for Health Research (NIHR) Leicester Cardiovascular Biomedical Research Unit, Glenfield Hospital</institution>
,
<addr-line>Leicester</addr-line>
,
<country>UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Martin, Nicholas G" sort="Martin, Nicholas G" uniqKey="Martin N" first="Nicholas G" last="Martin">Nicholas G. Martin</name>
<affiliation wicri:level="1">
<nlm:aff id="af15">
<institution>QIMR Berghofer Medical Research Institute</institution>
,
<addr-line>Brisbane</addr-line>
,
<country>Australia</country>
</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Tishkoff, Sarah" sort="Tishkoff, Sarah" uniqKey="Tishkoff S" first="Sarah" last="Tishkoff">Sarah Tishkoff</name>
<affiliation wicri:level="1">
<nlm:aff id="af21">
<addr-line>Department of Genetics</addr-line>
,
<institution>University of Pennsylvania</institution>
,
<addr-line>Philadelphia, Pennsylvania</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Schork, Nicholas J" sort="Schork, Nicholas J" uniqKey="Schork N" first="Nicholas J" last="Schork">Nicholas J. Schork</name>
<affiliation wicri:level="1">
<nlm:aff id="af22">
<addr-line>Department of Molecular and Experimental Medicine</addr-line>
,
<institution>The Scripps Research Institute</institution>
,
<addr-line>San Diego, California</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Kyvik, Kirsten Ohm" sort="Kyvik, Kirsten Ohm" uniqKey="Kyvik K" first="Kirsten Ohm" last="Kyvik">Kirsten Ohm Kyvik</name>
<affiliation wicri:level="1">
<nlm:aff id="af3">
<addr-line>Epidemiology Unit</addr-line>
,
<institution>The Danish Aging Research Center and The Danish Twin Registry, Institute of Public Health, University of Southern Denmark</institution>
,
<addr-line>Odense</addr-line>
,
<country>Denmark</country>
</nlm:aff>
<country xml:lang="fr">Danemark</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="af23">
<institution>Institute of Regional Health Services Research, University of Southern Denmark</institution>
,
<addr-line>Odense</addr-line>
,
<country>Denmark</country>
</nlm:aff>
<country xml:lang="fr">Danemark</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="af24">
<institution>Odense Patient data Explorative Network (OPEN), Odense University Hospital</institution>
,
<addr-line>Odense</addr-line>
,
<country>Denmark</country>
</nlm:aff>
<country xml:lang="fr">Danemark</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Dalg Rd, Christine" sort="Dalg Rd, Christine" uniqKey="Dalg Rd C" first="Christine" last="Dalg Rd">Christine Dalg Rd</name>
<affiliation wicri:level="1">
<nlm:aff id="af25">
<institution>Institute of Public Health, Environmental Medicine, University of Southern Denmark</institution>
,
<addr-line>Odense</addr-line>
,
<country>Denmark</country>
</nlm:aff>
<country xml:lang="fr">Danemark</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Spector, Timothy D" sort="Spector, Timothy D" uniqKey="Spector T" first="Timothy D" last="Spector">Timothy D. Spector</name>
<affiliation wicri:level="1">
<nlm:aff id="af1">
<addr-line>Department of Twin Research and Genetic Epidemiology</addr-line>
,
<institution>King's College London</institution>
,
<addr-line>London</addr-line>
,
<country>UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Aviv, Abraham" sort="Aviv, Abraham" uniqKey="Aviv A" first="Abraham" last="Aviv">Abraham Aviv</name>
<affiliation wicri:level="1">
<nlm:aff id="af5">
<institution>Center of Human Development and Aging, Rutgers, The State University of New Jersey, New Jersey Medical School</institution>
,
<addr-line>Newark, New Jersey</addr-line>
,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Journal of Medical Genetics</title>
<idno type="ISSN">0022-2593</idno>
<idno type="eISSN">1468-6244</idno>
<imprint>
<date when="2015">2015</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Alleles</term>
<term>Carrier Proteins (biosynthesis)</term>
<term>Carrier Proteins (blood)</term>
<term>Carrier Proteins (genetics)</term>
<term>Gene Expression Regulation</term>
<term>Genome-Wide Association Study</term>
<term>Humans</term>
<term>Leukocytes (cytology)</term>
<term>Melanoma (blood)</term>
<term>Melanoma (genetics)</term>
<term>Melanoma (pathology)</term>
<term>Risk Factors</term>
<term>Telomere (genetics)</term>
<term>Telomere Homeostasis (genetics)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>Allèles</term>
<term>Facteurs de risque</term>
<term>Homéostasie des télomères (génétique)</term>
<term>Humains</term>
<term>Leucocytes (cytologie)</term>
<term>Mélanome (anatomopathologie)</term>
<term>Mélanome (génétique)</term>
<term>Mélanome (sang)</term>
<term>Protéines de transport (biosynthèse)</term>
<term>Protéines de transport (génétique)</term>
<term>Protéines de transport (sang)</term>
<term>Régulation de l'expression des gènes</term>
<term>Télomère (génétique)</term>
<term>Étude d'association pangénomique</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="biosynthesis" xml:lang="en">
<term>Carrier Proteins</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="blood" xml:lang="en">
<term>Carrier Proteins</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en">
<term>Carrier Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="anatomopathologie" xml:lang="fr">
<term>Mélanome</term>
</keywords>
<keywords scheme="MESH" qualifier="biosynthèse" xml:lang="fr">
<term>Protéines de transport</term>
</keywords>
<keywords scheme="MESH" qualifier="blood" xml:lang="en">
<term>Melanoma</term>
</keywords>
<keywords scheme="MESH" qualifier="cytologie" xml:lang="fr">
<term>Leucocytes</term>
</keywords>
<keywords scheme="MESH" qualifier="cytology" xml:lang="en">
<term>Leukocytes</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Melanoma</term>
<term>Telomere</term>
<term>Telomere Homeostasis</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>Homéostasie des télomères</term>
<term>Mélanome</term>
<term>Protéines de transport</term>
<term>Télomère</term>
</keywords>
<keywords scheme="MESH" qualifier="pathology" xml:lang="en">
<term>Melanoma</term>
</keywords>
<keywords scheme="MESH" qualifier="sang" xml:lang="fr">
<term>Mélanome</term>
<term>Protéines de transport</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Alleles</term>
<term>Gene Expression Regulation</term>
<term>Genome-Wide Association Study</term>
<term>Humans</term>
<term>Risk Factors</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Allèles</term>
<term>Facteurs de risque</term>
<term>Humains</term>
<term>Régulation de l'expression des gènes</term>
<term>Étude d'association pangénomique</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<sec>
<title>Background</title>
<p>Leucocyte telomere length (LTL), which is fashioned by multiple genes, has been linked to a host of human diseases, including sporadic melanoma. A number of genes associated with LTL have already been identified through genome-wide association studies. The main aim of this study was to establish whether
<italic>DCAF4</italic>
(DDB1 and CUL4-associated factor 4) is associated with LTL. In addition, using ingenuity pathway analysis (IPA), we examined whether LTL-associated genes in the general population might partially explain the inherently longer LTL in patients with sporadic melanoma, the risk for which is increased with ultraviolet radiation (UVR).</p>
</sec>
<sec>
<title>Results</title>
<p>Genome-wide association (GWA) meta-analysis and de novo genotyping of 20 022 individuals revealed a novel association (p=6.4×10
<sup>−10</sup>
) between LTL and rs2535913, which lies within
<italic>DCAF4</italic>
. Notably, eQTL analysis showed that rs2535913 is associated with decline in
<italic>DCAF4</italic>
expressions in both lymphoblastoid cells and sun-exposed skin (p=4.1×10
<sup>−3</sup>
and 2×10
<sup>−3</sup>
, respectively). Moreover, IPA revealed that LTL-associated genes, derived from GWA meta-analysis (N=9190), are over-represented among genes engaged in melanoma pathways. Meeting increasingly stringent p value thresholds (p<0.05, <0.01, <0.005, <0.001) in the LTL-GWA meta-analysis, these genes were jointly over-represented for melanoma at p values ranging from 1.97×10
<sup>−169</sup>
to 3.42×10
<sup>−24</sup>
.</p>
</sec>
<sec>
<title>Conclusions</title>
<p>We uncovered a new locus associated with LTL in the general population. We also provided preliminary findings that suggest a link of LTL through genetic mechanisms with UVR and melanoma in the general population.</p>
</sec>
</div>
</front>
<back>
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<name sortKey="Chen, Wei" sort="Chen, Wei" uniqKey="Chen W" first="Wei" last="Chen">Wei Chen</name>
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